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  • MetaPhlAn 4 published + database update - The bioBakery help forum
    MetaPhlAn 4 integrates the novelty of metagenomic assemblies with the sensitivity and fidelity of reference-based analyses, providing efficient metagenomic profiling of uncharacterized species and enabling deeper and more comprehensive microbiome analyses For more detailed information about MetaPhlAn 4, please visit Announcing MetaPhlAn 4
  • MetaPhlAn 4. 1 release (new virome database and SGB database update)
    MetaPhlAn 4 1 release (new virome database and SGB database update) Announcement: We are pleased to share that MetaPhlAn 4 1 is now available, which includes a new module for viral profiling as described in this bioRxiv preprint (Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples)
  • MetaPhlAn 4. 2. 2 release (initial long-read sequencing support and . . .
    For details on MetaPhlan 4, check announcing MetaPhlAn 4 or visit the MetaPhlAn 4 GitHub repository For the full list of dropped features, modifications, and new features implemented in this new release check the MetaPhlAn 4 2 2 release notes
  • Announcing MetaPhlAn 4 - The bioBakery help forum
    MetaPhlAn 4 integrates the novelty of metagenomic assemblies with the sensitivity and fidelity of reference-based analyses, providing efficient metagenomic profiling of uncharacterized species and enabling deeper and more comprehensive microbiome analyses
  • Announcing MetaPhlAn 4. 1. 1 release - The bioBakery help forum
    What is new in MetaPhlAn 4 1 1 New utility script (fix_relab_mpa4 py) to fix the profiles generated with previous versions of the MetaPhlAn database Bug fix allowing MetaPhlAn to continue its execution even when the option --profile_vsc is set and no viral hits are found Bug fix in the new implementation (since StrainPhlAn 4 1) of --print
  • Latest MetaPhlAn topics - The bioBakery help forum
    Announcement We are pleased to share that MetaPhlAn 4 2 2 is now available, which incorporates taxonomic profiling of long-read metagenomes for the first time and includes a new v
  • How to install the latest metaphlan reference DB?
    The code to use the mpa_vJan21 version of the MetaPhlAn database (i e MetaPhlAn 4) is not available yet, we hope to release the code in the following weeks In the meanwhile, the last stable version of MetaPhlAn is mpa_v3 0 For a correct installation of this version, you should just run metaphlan --install imontero September 26, 2022, 7:25am 4
  • MetaPhlAn 4 + HUMAnN 4 compatibility - forum. biobakery. org
    HUMAnN users - I’m making a quick pinned post about MetaPhlAn 4 + HUMAnN 4 compatibility since we’re seeing a lot of posts raising similar issues We will follow up with more detailed information in the short term, and longer-term we’re also improving our version checking at install and runtime to avoid some of these issues going forward Key point 1: The current HUMAnN 4 release (v4 0 0
  • Merge_metaphlan_tables. py with absolute abundance
    Hi all! In case if someone will need it, here is the modified file that merges absolute abundances instead of relative abundances in metaphlan output (you should run metaphlan with ‘-t rel_ab_w_read_stats’ option) merge_metaphlan_tables_abs txt (3 6 KB) Rename it as merge_metaphlan_tables_abs py and make it executable Usage is the same as for relative abundance merging
  • Minimap2 Database Files for MetaPhlAn 4. 2. 2
    Additionally, as previously reported the concatenation of the VNA and SGB fna files has to be manually completed by the user as the SGB fna file is deleted and no fna is retained when installing to a custom directory via the install script as of MetaPhlAn version 4 2 4 (21 Oct 2025)





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